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BaseInfo

ncRNA ID novel_vvi_miR454
Species Vitis vinifera
Class miRNA
Genome position Chr14:2337542-2337608 [+]
Reference genome 12X
Source SRR1528356;SRR1528363
Length 24
Mature sequence(if miRNA) 1 - AGGAGAGUGGACGUAGGCAAAGAA - 24
Stem-loop(if miRNA) ----A        GACGUA    AAGAAGUGCCGAAC
     GGAGAGUG      GGCA              C
     ||||||||      ||||              A
     UCUCUCAC      GUUU              C
CCUUC        ------    GUUCUCUCAAAUAU
Stem-loop sequence AGGAGAGUGGACGUAGGCAAAGAAGUGCCGAACCACUAUAAACUCUCUUGUUUGCACUCUCUCUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA174065.1
ncRNA:24   AAGAAACGGAUGCAGGUGAGAGGA   1
  ||||||||*||||||||||=||||
targets:668   UUCUUUGCGUACGUCCACUUUCCU   691

2.5 TSA: Vitis vinifera Locus_30239_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget