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BaseInfo

ncRNA ID novel_vvi_miR450
Species Vitis vinifera
Class miRNA
Genome position Chr13:665552-665610 [-]
Reference genome 12X
Source SRR1528356
Length 24
Mature sequence(if miRNA) 36 - AACCAACAUAACUAAAGUGAACUU - 59
Stem-loop(if miRNA) --   C       C    G         U
  AAC AACAUAA UAAA UGAACUUAU A
  ||| ||||||| |||| ||||||||| U
  UUG UUGUAUU AUUU AUUUGAAUA C
AG   A       A    A         A
Stem-loop sequence AACCAACAUAACUAAAGUGAACUUAUUAUCAAUAAGUUUAAUUUAAUUAUGUUAGUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA172889.1
ncRNA:24   UUCAAGUGAAAUCAAUACAACCAA   1
  ||||||||||||*|||||||||||
targets:3901   AAGUUCACUUUAAUUAUGUUGGUU   3924

1.5 TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence NA coding protein psRNATarget
KA139149.1
ncRNA:24   UUCAAGUGAAAUCAAUACAACCAA   1
  ||||||||||||*|||||||||||
targets:2025   AAGUUCACUUUAUUUAUGUUGGUU   2048

1.5 TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence NA coding protein psRNATarget