Search result

BaseInfo

ncRNA ID	novel_vvi_miR445
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:20773761-20773870 [-]
Reference genome	12X
Source	SRR1528356;SRR1528370;SRR1528380
Length	24
Mature sequence(if miRNA)	87 - UUUGACAAUGAUUUUAGGAAGCGU - 110
Stem-loop(if miRNA)	--UUUGAC       U       C U     A      --                         AAUGAUU UAGGAAG G UUUUA UUUUUU  UUAAUACUUGAAAGAUG         ||||||| ||||||| | ||||| ||||||  ||||||||||||||||A         UUACUAA AUCCUUC C AAGAU AAAAAA  AAUUAUGAAUUUUUUAA AUAAAUCA       C       - U     A      UU
Stem-loop sequence	UUUGACAAUGAUUUUAGGAAGCGUUUUUAAUUUUUUUUAAUACUUGAAAGAUGAAAUUUUUUAAGUAUUAAUUAAAAAAAUAGAAUCCUUCCUACAAUCAUUACUAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA154839.1	ncRNA:24   UGCGAAGGAUUUUAGUAACAGUUU   1   ||*||||||||||||||||||||| targets:2684   ACACUUCCUAAAAUCAUUGUCAAA   2707 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA135132.1	ncRNA:24   UGCGAAGGAUUUUAGUAACAGUUU   1   |=*=||=||||||||||||||||| targets:1211   AUAUUUUCUAAAAUCAUUGUCAAA   1234 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_13541_Transcript_5/6_Confidence_0.722.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166591.1	ncRNA:24   UGCGAAGGAUUUUAGUAACAGUUU   1   ||||||||||||||||*||||||| targets:886   ACGCUUCCUAAAAUCACUGUCAAA   909 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1103_Transcript_2/9_Confidence_0.406.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA164362.1	ncRNA:24   UGCGAAGGAUUUUAGUAACAGUUU   1   ==|||||=||=||||||||||||| targets:195   GUGCUUCUUAGAAUCAUUGUCAAA   218 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_9546_Transcript_2/13_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA141742.1	ncRNA:24   UGCGAAGGAUUUUAGUAACAGUUU   1   |=*||||*||||*||||||||||| targets:40   AUACUUCAUAAAUUCAUUGUCAAA   63 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_7708_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002277470.3	ncRNA:24   UGCGAAGGA-UUUUAGUAACAGUUU   1   |=||*||||-|=||||||||||||| targets:1876   AUGCAUCCUUAGAAUCAUUGUCAAA   1900 Target Full Sequence	3.0	PREDICTED: Vitis vinifera F-box/LRR-repeat protein 3 (LOC100246775), mRNA	NA	coding protein	psRNATarget
XM_002271424.4	ncRNA:24   UG--CGAAGGAUUUUAGUAACAGUUU   1   ||--|=||==*||||||||||||||| targets:1113   ACUAGUUUUUGAAAAUCAUUGUCAAA   1138 Target Full Sequence	3.0	PREDICTED: Vitis vinifera remorin (LOC100263385), mRNA	NA	coding protein	psRNATarget