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BaseInfo

ncRNA ID	novel_vvi_miR443
Species	Vitis vinifera
Class	miRNA
Genome position	Chr13:23330936-23331146 [-]
Reference genome	12X
Source	SRR1528356
Length	24
Mature sequence(if miRNA)	188 - AUUUAUUUUUUGGCUGAAUAGAAA - 211
Stem-loop(if miRNA)	--A   A        C                         A              C        U  U    GU C          A      G         U    UUU UUUUUUGG UGAAUAGAAAAAGCUAAAUAUUUUG UUUUUUCUAUUCAG UAAAAGUA CU AUUG  A UAACCAACAU AUUAAA UGAACUUAU C    ||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||  | |||||||||| |||||| ||||||||| U    AAA AAAAAACC AUUUAUCUUUUUCGGUUUAUAAAAC AAAAAAGAUAAGUC AUUUUCAU GA UAAC  U GUUGGUUGUA UAAUUU AUUUGAAUA C UAC   C        A                         C              A        U  U    UG A          G      G         A
Stem-loop sequence	AUUUAUUUUUUGGCUGAAUAGAAAAAGCUAAAUAUUUUGAUUUUUUCUAUUCAGCUAAAAGUAUCUUAUUGGUACUAACCAACAUAAUUAAAGUGAACUUAUUCUCAAUAAGUUUAGUUUAAUGAUGUUGGUUGAUGUCAAUUAGUUACUUUUAACUGAAUAGAAAAAACCAAAAUAUUUGGCUUUUUCUAUUUAACCAAAAAACAAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA134791.1	ncRNA:24   AAAG---AUAAGUCGGUUUUUUAUUUA   1   *|||---|||||||||||||||*|||| targets:448   AUUCCAUUAUUCAGCCAAAAAAAAAAU   474 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1285_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159067.1	ncRNA:24   AAAGAUAAGUCGGUUUUUUAUUUA   1   |||||||||||=|||||||||||* targets:1469   UUUCUAUUCAGUCAAAAAAUAAAC   1492 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167155.1	ncRNA:24   AAAGAUAAGUCGGUUUUUUAUUUA   1   |||||||||||||||||||*|||* targets:3815   UUUCUAUUCAGCCAAAAAACAAAC   3838 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:24   AAAGAUAAGUCGGUUUUUUAUUUA   1   |||||||||||||||||||*|||* targets:3597   UUUCUAUUCAGCCAAAAAACAAAC   3620 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:24   AAAGAUAAGUCGGUUUUUUAUUUA   1   |||=|||||||||||||||*|||* targets:2026   UUUUUAUUCAGCCAAAAAACAAAC   2049 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
FQ380910.1	ncRNA:24   AA--AGAUAAGUCGGUUUUUUAUUUA   1   ||--|||||||||||||||||*|||* targets:953   UUGCUCUAUUCAGCCAAAAAAAAAAA   978 Target Full Sequence	2.5	Vitis vinifera clone SS0ACG1YP18	NA	coding protein	psRNATarget
FQ397030.1	ncRNA:24   AA--AGAUAAGUCGGUUUUUUAUUUA   1   ||--|||||||||||||||||*|||* targets:953   UUGCUCUAUUCAGCCAAAAAAAAAAA   978 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB8YB09	NA	coding protein	psRNATarget
FQ392330.1	ncRNA:24   AA--AGAUAAGUCGGUUUUUUAUUUA   1   ||--|||||||||||||||||*|||* targets:950   UUGCUCUAUUCAGCCAAAAAAAAAAA   975 Target Full Sequence	2.5	Vitis vinifera clone SS0AFA6YC16	NA	coding protein	psRNATarget
KA174657.1	ncRNA:24   AAAGAUAAGUCGGUUUUUUAUUUA   1   |||||=**|||||||||||||||| targets:230   UUUCUGCCCAGCCAAAAAAUAAAU   253 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_13312_Transcript_5/6_Confidence_0.167.Vivi mRNA sequence	NA	coding protein	psRNATarget