ncRNA ID | ath-miR391-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:24293093-24293298 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 119 - ACGGUAUCUCUCCUACGUAGC - 139 |
Stem-loop(if miRNA) |
    --       CACAU    G   ----     CU   U  A G  U    AAC    A   -   AU     U  C          G  C      -----CU     UAGA  GUGAUUA     ACAA UGG    UCUUG  UCU CU U GU UUAA   UGCA AUA AAG  UUGCU CG AGGAGAGAUA CG CAUCAC       CUUCU ||||  |||||||     |||| |||    |||||  ||| || | || ||||   |||| ||| |||  ||||| || |||||||||| || ||||||       ||||A AUCU  CACUAAU     UGUU ACU    GGAAC  AGA GA G CA AAUU   ACGU UAU UUC  AACGA GC UCCUCUCUAU GC GUGGUG       GAAGA     CC       -AACU    G   UUAU     -U   -  - G  U    -CU    A   A   CU     U  A          G  A      AUCAAUU     |
Stem-loop sequence | UAGAGUGAUUACACAUACAAGUGGUCUUGCUUCUUCUAUGGUUUUAAAACUGCAAAUAAAGAUUUGCUUCGCAGGAGAGAUAGCGCCAUCACCUCUUCUAAGAAGUUAACUAGUGGUGACGGUAUCUCUCCUACGUAGCAAUCCUUAUAUAUGCAUCUUAAUACGGAGAGAUCAAGGUAUUUCAGUUGUUCAAUAAUCACCCUCUA |
1 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
2 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |