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BaseInfo

ncRNA ID ath-miR391-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:24293093-24293298 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 119 - ACGGUAUCUCUCCUACGUAGC - 139
Stem-loop(if miRNA)     --       CACAU    G   ----     CU   U  A G  U    AAC    A   -   AU     U  C          G  C      -----CU    
UAGA  GUGAUUA     ACAA UGG    UCUUG  UCU CU U GU UUAA   UGCA AUA AAG  UUGCU CG AGGAGAGAUA CG CAUCAC       CUUCU
||||  |||||||     |||| |||    |||||  ||| || | || ||||   |||| ||| |||  ||||| || |||||||||| || ||||||       ||||A
AUCU  CACUAAU     UGUU ACU    GGAAC  AGA GA G CA AAUU   ACGU UAU UUC  AACGA GC UCCUCUCUAU GC GUGGUG       GAAGA
    CC       -AACU    G   UUAU     -U   -  - G  U    -CU    A   A   CU     U  A          G  A      AUCAAUU    
Stem-loop sequence UAGAGUGAUUACACAUACAAGUGGUCUUGCUUCUUCUAUGGUUUUAAAACUGCAAAUAAAGAUUUGCUUCGCAGGAGAGAUAGCGCCAUCACCUCUUCUAAGAAGUUAACUAGUGGUGACGGUAUCUCUCCUACGUAGCAAUCCUUAUAUAUGCAUCUUAAUACGGAGAGAUCAAGGUAUUUCAGUUGUUCAAUAAUCACCCUCUA

Reference

1 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
2 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
3 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).