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BaseInfo

ncRNA ID novel_vvi_miR430
Species Vitis vinifera
Class miRNA
Genome position Chr1:16832144-16832250 [+]
Reference genome 12X
Source SRR1528356;SRR1528363;SRR1528380
Length 21
Mature sequence(if miRNA) 1 - UUUGGUAGCGAUUUUAGGAAG - 21
Stem-loop(if miRNA) --        C A       A          AC          C     AGAU
  UUUGGUAG G UUUUAGG AGUGUUUCUA  CUUUCUAAUA UUGAA    A
  |||||||| | ||||||| ||||||||||  |||||||||| |||||    A
  AAACCAUC C AAAAUCC UCACAAAGAU  GAAAGAUUGU AACUU    A
GU        A C       C          CU          A     AAAA
Stem-loop sequence UUUGGUAGCGAUUUUAGGAAGUGUUUCUAACCUUUCUAAUACUUGAAAGAUAAAAAAAUUCAAAUGUUAGAAAGUCUAGAAACACUCCCUAAAACCACUACCAAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA174184.1
ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1
  *|||||||||||*||||||||
targets:3387   AUUCCUAAAAUCACUACCAAA   3407

1.5 TSA: Vitis vinifera Locus_8237_Transcript_8/10_Confidence_0.467.Vivi mRNA sequence NA coding protein psRNATarget
XM_010654642.2
ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1
  |||||||=||||*||||||||
targets:2097   CUUCCUAGAAUCACUACCAAA   2117

2.5 PREDICTED: Vitis vinifera alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (LOC100264660), mRNA NA coding protein psRNATarget
KA138578.1
ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1
  |||||||=||||*||||||||
targets:2338   CUUCCUAGAAUCACUACCAAA   2358

2.5 TSA: Vitis vinifera Locus_5525_Transcript_9/10_Confidence_0.405.Vivi mRNA sequence NA coding protein psRNATarget
KA139131.1
ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1
  =||=||||||||*||||||||
targets:2370   UUUUCUAAAAUCACUACCAAA   2390

2.5 TSA: Vitis vinifera Locus_5005_Transcript_7/10_Confidence_0.523.Vivi mRNA sequence NA coding protein psRNATarget
KA154256.1
ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1
  =||||||*||||*||||||||
targets:864   UUUCCUAUAAUCACUACCAAA   884

2.5 TSA: Vitis vinifera Locus_5140_Transcript_5/6_Confidence_0.688.Vivi mRNA sequence NA coding protein psRNATarget
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