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BaseInfo

ncRNA ID	novel_vvi_miR428
Species	Vitis vinifera
Class	miRNA
Genome position	Chr12:15757575-15757681 [+]
Reference genome	12X
Source	SRR1528356;SRR1528363;SRR1528380
Length	21
Mature sequence(if miRNA)	1 - UUUGGUAGCGAUUUUAGGAAG - 21
Stem-loop(if miRNA)	--     U  CG            CC                       AAUU   UUUGG AG  AUUUUAGGAAGC  UUUUAAUAUUUUUAAUAUUUGAA    U   ||||| ||  ||||||||||||  |||||||||||||||||||||||    U   AAACC UC  UAAGAUCUUUCG  AAGAUUGUAAAGAUUGUGAACUU    U GC     C  AU            CA                       ACUA
Stem-loop sequence	UUUGGUAGCGAUUUUAGGAAGCCCUUUUAAUAUUUUUAAUAUUUGAAAAUUUUUAUCAUUCAAGUGUUAGAAAUGUUAGAAACGCUUUCUAGAAUUACUCCCAAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA174184.1	ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1   *|||||||||||*|||||||| targets:3387   AUUCCUAAAAUCACUACCAAA   3407 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_8237_Transcript_8/10_Confidence_0.467.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010654642.2	ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1   |||||||=||||*|||||||| targets:2097   CUUCCUAGAAUCACUACCAAA   2117 Target Full Sequence	2.5	PREDICTED: Vitis vinifera alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (LOC100264660), mRNA	NA	coding protein	psRNATarget
KA138578.1	ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1   |||||||=||||*|||||||| targets:2338   CUUCCUAGAAUCACUACCAAA   2358 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_5525_Transcript_9/10_Confidence_0.405.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139131.1	ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1   =||=||||||||*|||||||| targets:2370   UUUUCUAAAAUCACUACCAAA   2390 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_5005_Transcript_7/10_Confidence_0.523.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA154256.1	ncRNA:21   GAAGGAUUUUAGCGAUGGUUU   1   =||||||*||||*|||||||| targets:864   UUUCCUAUAAUCACUACCAAA   884 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_5140_Transcript_5/6_Confidence_0.688.Vivi mRNA sequence	NA	coding protein	psRNATarget