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BaseInfo

ncRNA ID novel_vvi_miR418
Species Vitis vinifera
Class miRNA
Genome position Chr9:21823828-21823894 [+]
Reference genome 12X
Source SRR1528356;SRR1528381
Length 24
Mature sequence(if miRNA) 44 - AGUUCAGUUAUGUUGGAUGAUGCC - 67
Stem-loop(if miRNA) --                 A  G         U
  UAUCAUCUAACAUAAUU AA UGAACUUGU A
  ||||||||||||||||| || ||||||||| U
  GUAGUAGGUUGUAUUGA UU ACUUGGAUA C
CC                 C  G         A
Stem-loop sequence UAUCAUCUAACAUAAUUAAAGUGAACUUGUUAUCAAUAGGUUCAGUUCAGUUAUGUUGGAUGAUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA139149.1
ncRNA:24   CCGUAGUAGGUUGUAUUGACUUGA   1
  |*|||||*|||||||||||*||||
targets:1986   GACAUCAACCAACAUAACUAAACU   2009

2.5 TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence NA coding protein psRNATarget