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BaseInfo

ncRNA ID novel_vvi_miR395
Species Vitis vinifera
Class miRNA
Genome position Chr13:4265143-4265205 [+]
Reference genome 12X
Source SRR1528355;SRR1528358;SRR1528359;SRR1528369;SRR1528381;SRR1528384;SRR1528391;SRR1528392;SRR1528396;SRR1528398;SRR1528401;SRR1528403;SRR1528405;SRR1528410;SRR1528415;SRR890731
Length 21
Mature sequence(if miRNA) 1 - UCCAAAGGGAUCGCAUUGAUC - 21
Stem-loop(if miRNA) --           C    U     C   CU U
  UCCAAAGGGAU GCAU GAUCC AAA  C C
  ||||||||||| |||| ||||| |||  | C
  AGGUUUCCCUA CGUA CUAGG UUU  G A
UU           U    -     -   CU U
Stem-loop sequence UCCAAAGGGAUCGCAUUGAUCCCAAACUCUCCAUGUCUUUGGAUCAUGCUAUCCCUUUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA142818.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:591   GAUCAAUGCGAUCCCUUUGGA   611

0.0 TSA: Vitis vinifera Locus_49986_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget
KA149142.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:735   GAUCAAUGCGAUCCCUUUGGA   755

0.0 TSA: Vitis vinifera Locus_16493_Transcript_3/3_Confidence_0.500.Vivi mRNA sequence NA coding protein psRNATarget