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BaseInfo

ncRNA ID	novel_vvi_miR394
Species	Vitis vinifera
Class	miRNA
Genome position	Chr6:4485461-4485555 [+]
Reference genome	12X
Source	SRR1528354
Length	21
Mature sequence(if miRNA)	1 - UUAAAUACAUCCAUCUUCUCU - 21
Stem-loop(if miRNA)	--UUAAAUA       C  C        U   U   C     -   GA          CAUCCAU UU UCUCUUUU ACA CCA CUUAU UUG  A          ||||||| || |||||||| ||| ||| ||||| |||          GUAGGUG AA AGAGAAAA UGU GGU GAGUA GAC  A ACAAUAUAC       U  A        C   C   A     A   AA
Stem-loop sequence	UUAAAUACAUCCAUCUUCUCUCUUUUUACAUCCACCUUAUUUGGAAAAACAGAAUGAGAUGGCUGUCAAAAGAGAAAAUGUGGAUGCAUAUAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA161231.1	ncRNA:21   UCUCUUCUACCUACAUAAAUU   1   ||=*|||=||||||||||||| targets:594   AGGAAAGGUGGAUGUAUUUAA   614 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_6528_Transcript_3/4_Confidence_0.700.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_003631845.3	ncRNA:21   UCUCUUCUACCUACAUAAAUU   1   ||=*|||=||||||||||||| targets:683   AGGAAAGGUGGAUGUAUUUAA   703 Target Full Sequence	3.0	PREDICTED: Vitis vinifera ribosomal RNA small subunit methyltransferase F (LOC100267747), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010650718.2	ncRNA:21   UCUCUUCUACCUACAUAAAUU   1   ||=*|||=||||||||||||| targets:686   AGGAAAGGUGGAUGUAUUUAA   706 Target Full Sequence	3.0	PREDICTED: Vitis vinifera ribosomal RNA small subunit methyltransferase F (LOC100267747), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA161229.1	ncRNA:21   UCUCUUCUACCUACAUAAAUU   1   ||=*|||=||||||||||||| targets:1044   AGGAAAGGUGGAUGUAUUUAA   1064 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_6528_Transcript_1/4_Confidence_0.700.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA161230.1	ncRNA:21   UCUCUUCUACCUACAUAAAUU   1   ||=*|||=||||||||||||| targets:1054   AGGAAAGGUGGAUGUAUUUAA   1074 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_6528_Transcript_2/4_Confidence_0.700.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002270476.4	ncRNA:21   UCUCUUCUACCUACAUAAAUU   1   **|*|=||||||||||||||= targets:2340   UCAUAGGAUGGAUGUAUUUAG   2360 Target Full Sequence	3.0	PREDICTED: Vitis vinifera cation/calcium exchanger 1 (LOC100246655), mRNA	NA	coding protein	psRNATarget