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BaseInfo

ncRNA ID	novel_vvi_miR389
Species	Vitis vinifera
Class	miRNA
Genome position	Chr12:20918639-20918851 [-]
Reference genome	12X
Source	SRR1528353;SRR1528381;SRR1528383;SRR1528400
Length	21
Mature sequence(if miRNA)	1 - UAAAAAACCAAACAUCAAGCU - 21
Stem-loop(if miRNA)	--           A           ---G            A                  C          GC           U                      C   CUUGAUGUUUG UUUUUUAUUUC    UUCUUUUGUUGU UAUGAGAAUAAUUUGAUU CCUUUUAACU  AUUUUGUCAUA GAUGUUAUUUUUUUUUUCUCGU G   ||||||||||| |||||||||||    |||||||||||| |||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||||   GAACUACAAAC AAAAAAUAAAG    AAGAAAACAACA AUACUCUUGUUAAACUAA GGAAAAUUGA  UAAAACAGUAU CUACAAUAAAAGAAAAAGAGCA U UC           C           AGUA            G                  A          GA           C                      C
Stem-loop sequence	CUUGAUGUUUGAUUUUUUAUUUCGUUCUUUUGUUGUAUAUGAGAAUAAUUUGAUUCCCUUUUAACUGCAUUUUGUCAUAUGAUGUUAUUUUUUUUUUCUCGUCGUCACGAGAAAAAGAAAAUAACAUCCUAUGACAAAAUAGAGUUAAAAGGAAAUCAAAUUGUUCUCAUAGACAACAAAAGAAAUGAGAAAUAAAAAACCAAACAUCAAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA141225.1	ncRNA:21   UCGAACUACAAACCAAAAAAU   1   |*|||||||||||*||||||| targets:2028   AACUUGAUGUUUGAUUUUUUA   2048 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_7748_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA141224.1	ncRNA:21   UCGAACUACAAACCAAAAAAU   1   |*|||||||||||*||||||| targets:1708   AACUUGAUGUUUGAUUUUUUA   1728 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_7748_Transcript_3/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170367.1	ncRNA:21   UCGAACUACAAACCAAAAAAU   1   **|||*|||||||*||||||| targets:4368   UCCUUUAUGUUUGUUUUUUUA   4388 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_8763_Transcript_2/3_Confidence_0.818.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170368.1	ncRNA:21   UCGAACUACAAACCAAAAAAU   1   **|||*|||||||*||||||| targets:3956   UCCUUUAUGUUUGUUUUUUUA   3976 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_8763_Transcript_3/3_Confidence_0.818.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010655739.2	ncRNA:21   UCGAACUACAAACCAAAAAAU   1   **|||*|||||||*||||||| targets:3897   UCCUUUAUGUUUGUUUUUUUA   3917 Target Full Sequence	2.5	PREDICTED: Vitis vinifera polyadenylation and cleavage factor homolog 4 (LOC100251089), mRNA	NA	coding protein	psRNATarget
XM_010660211.2	ncRNA:21   UCGAACUACAAACCAAAAAAU   1   |||*|*||||||||||||||* targets:1579   AGCAUUAUGUUUGGUUUUUUU   1599 Target Full Sequence	3.0	PREDICTED: Vitis vinifera mitochondrial substrate carrier family protein B (LOC100265022), transcript variant X4, mRNA	NA	coding protein	psRNATarget