ncRNA ID | novel_vvi_miR382 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr14:10280518-10280625 [+] |
Reference genome | 12X |
Source | SRR1048204;SRR1528417 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CUUGACAAUGAUUGUGGGAAG - 21 |
Stem-loop(if miRNA) |
--C            G                 C                   G    UUGACAAUGAUU UGGGAAGUGUUUUUAGU UUUCUAAUACUUGGAAAAU U    |||||||||||| ||||||||||||||||| |||||||||||||||||||    AACUGUUACUAA ACUCUUCACAAAGAUCG AAAGAUUAUGAACUUUUUA U GCA            A                 U                   U |
Stem-loop sequence | CUUGACAAUGAUUGUGGGAAGUGUUUUUAGUCUUUCUAAUACUUGGAAAAUGUUUAUUUUUCAAGUAUUAGAAAUGCUAGAAACACUUCUCAAAAUCAUUGUCAAACG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA172039.1 |
|
3.0 | TSA: Vitis vinifera Locus_15150_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA154839.1 |
|
3.0 | TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence | NA | coding protein | psRNATarget |