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BaseInfo

ncRNA ID novel_vvi_miR382
Species Vitis vinifera
Class miRNA
Genome position Chr14:10280518-10280625 [+]
Reference genome 12X
Source SRR1048204;SRR1528417
Length 21
Mature sequence(if miRNA) 1 - CUUGACAAUGAUUGUGGGAAG - 21
Stem-loop(if miRNA) --C            G                 C                   G
   UUGACAAUGAUU UGGGAAGUGUUUUUAGU UUUCUAAUACUUGGAAAAU U
   |||||||||||| ||||||||||||||||| |||||||||||||||||||
   AACUGUUACUAA ACUCUUCACAAAGAUCG AAAGAUUAUGAACUUUUUA U
GCA            A                 U                   U
Stem-loop sequence CUUGACAAUGAUUGUGGGAAGUGUUUUUAGUCUUUCUAAUACUUGGAAAAUGUUUAUUUUUCAAGUAUUAGAAAUGCUAGAAACACUUCUCAAAAUCAUUGUCAAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA172039.1
ncRNA:21   GAA-GGGUGUUAGUAACAGUUC   1
  |||-|=||||||||||||||||
targets:2308   CUUGCUCACAAUCAUUGUCAAG   2329

3.0 TSA: Vitis vinifera Locus_15150_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget
KA154839.1
ncRNA:21   GAAGGGUGUUAGUAACAGUUC   1
  |||||=|*||||||||||||*
targets:2687   CUUCCUAAAAUCAUUGUCAAA   2707

3.0 TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence NA coding protein psRNATarget