Search result

BaseInfo

ncRNA ID novel_vvi_miR375
Species Vitis vinifera
Class miRNA
Genome position Chr17:355698-355848 [-]
Reference genome 12X
Source SRR1528353
Length 21
Mature sequence(if miRNA) 1 - ACCGGCUCUUAUCUCUCAUGC - 21
Stem-loop(if miRNA) --    -      A     UC   -UGG     -     -     U       -U    ----------   GUUUCAAAACAC
  AUGA AGAUAA GAGUC  GUC    UAGCC AAGGA UGACU GCCUAAA  CCAC          CAG            U
  |||| |||||| |||||  |||    ||||| ||||| ||||| |||||||  ||||          |||            G
  UACU UCUAUU CUCGG  CAG    AUCGG UUCCU ACUGA CGGAUUU  GGUG          ACA            A
CG    C      -     -C   UCAA     C     U     -       CU    CCUUAGCGAA   CCUAUUAAUGUA
Stem-loop sequence AUGAAGAUAAAGAGUCUCGUCUGGUAGCCAAGGAUGACUUGCCUAAAUCCACCAGGUUUCAAAACACUGAAUGUAAUUAUCCACAAAGCGAUUCCGUGGUCUUUAGGCAGUCAUUCCUUCGGCUAAACUGACCGGCUCUUAUCUCUCAUGC