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BaseInfo

ncRNA ID novel_vvi_miR360
Species Vitis vinifera
Class miRNA
Genome position Chr11:14277978-14278039 [+]
Reference genome 12X
Source SRR1528352;SRR1528364
Length 24
Mature sequence(if miRNA) 39 - GGACAAUAUCUAUACAGUUGGGUG - 62
Stem-loop(if miRNA) --      CU   U          A  CUAG
  CCUAAC  UGU GAUAUUGUCC CU    G
  ||||||  ||| |||||||||| ||
  GGGUUG  AUA CUAUAACAGG GA    U
GU      AC   U          C  AACU
Stem-loop sequence CCUAACCUUGUUGAUAUUGUCCACUCUAGGUUCAAAGCGGACAAUAUCUAUACAGUUGGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA158923.1
ncRNA:24   GUGGGUUGACAUAUCUAUAACAGG   1
  ||=|||||||||||||||||||||
targets:169   CAUCCAACUGUAUAGAUAUUGUCC   192

0.0 TSA: Vitis vinifera Locus_60651_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget
KA137628.1
ncRNA:24   GUGGGUUGACAUAUCUAUAACAGG   1
  =|||||||**||||||||||||||
targets:151   UACCCAACCAUAUAGAUAUUGUCC   174

2.0 TSA: Vitis vinifera Locus_1147_Transcript_10/25_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget