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BaseInfo

ncRNA ID lus-miR172h
Species Linum usitatissimum
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - AGAAUCUUGAUGAUGCUGCAU - NA
Stem-loop(if miRNA)      -AACCAAC      UGG    A                     A   ---G   UA  UACAG       AAU   A            G CUACC      -             ACAUAACA   G
AUGGA        AGUCAU   UCGC GGUGCAGCAUCAUCAAGAUUC CAU    CAU  UA     AGAGUUA   CGA UUUAAACCUACU A     ACAAAA GCAAGGCAUAGUU        UCU G
|||||        ||||||   |||| ||||||||||||||||||||| |||    |||  ||     |||||||   ||| |||||||||||| |     |||||| |||||||||||||        ||| A
UACUU        UCAGUA   GGCG CUACGUCGUAGUAGUUCUAAG GUG    GUG  AU     UCUUAGU   GCU AAGUUUGGAUGA U     UGUUUU UGUUCUGUGUCGG        AGA A
     CGAUUAAU      UAU    A                     A   AUCG   GC  ---UA       ---   -            G --UUC      G             --------   A
Stem-loop sequence AUGGAAACCAACAGUCAUUGGUCGCAGGUGCAGCAUCAUCAAGAUUCACAUGCAUUAUAUACAGAGAGUUAAAUCGAAUUUAAACCUACUGACUACCACAAAAGCAAGGCAUAGUUACAUAACAUCUGGAAAAGAGGCUGUGUCUUGUGUUUUGUCUUUGAGUAGGUUUGAAUCGUGAUUCUAUUACGGUGGCUAGUGAGAAUCUUGAUGAUGCUGCAUCAGCGGUAUAUGACUUAAUUAGCUUCAU

Reference

1 PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes";
Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY;
Planta. 237:1149-1161(2013).