ncRNA ID | lus-miR172h |
Species | Linum usitatissimum |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - AGAAUCUUGAUGAUGCUGCAU - NA |
Stem-loop(if miRNA) |
     -AACCAAC      UGG    A                     A   ---G   UA  UACAG       AAU   A            G CUACC      -             ACAUAACA   G AUGGA        AGUCAU   UCGC GGUGCAGCAUCAUCAAGAUUC CAU    CAU  UA     AGAGUUA   CGA UUUAAACCUACU A     ACAAAA GCAAGGCAUAGUU        UCU G |||||        ||||||   |||| ||||||||||||||||||||| |||    |||  ||     |||||||   ||| |||||||||||| |     |||||| |||||||||||||        ||| A UACUU        UCAGUA   GGCG CUACGUCGUAGUAGUUCUAAG GUG    GUG  AU     UCUUAGU   GCU AAGUUUGGAUGA U     UGUUUU UGUUCUGUGUCGG        AGA A      CGAUUAAU      UAU    A                     A   AUCG   GC  ---UA       ---   -            G --UUC      G             --------   A |
Stem-loop sequence | AUGGAAACCAACAGUCAUUGGUCGCAGGUGCAGCAUCAUCAAGAUUCACAUGCAUUAUAUACAGAGAGUUAAAUCGAAUUUAAACCUACUGACUACCACAAAAGCAAGGCAUAGUUACAUAACAUCUGGAAAAGAGGCUGUGUCUUGUGUUUUGUCUUUGAGUAGGUUUGAAUCGUGAUUCUAUUACGGUGGCUAGUGAGAAUCUUGAUGAUGCUGCAUCAGCGGUAUAUGACUUAAUUAGCUUCAU |
1 | PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes"; Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY; Planta. 237:1149-1161(2013). |