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BaseInfo

ncRNA ID	novel_vvi_miR354
Species	Vitis vinifera
Class	miRNA
Genome position	Chr8:2752511-2752601 [+]
Reference genome	12X
Source	SRR1528352;SRR1528410
Length	24
Mature sequence(if miRNA)	1 - CGAGGCUCUAAUAUCAUGUUGAAC - 24
Stem-loop(if miRNA)	--C    C                     CAAU         A CU    GAGG UCUAAUAUCAUGUUGAACAAC    UUUUCUAAA G  U    |||| |||||||||||||||||||||    ||||||||| |    CUCC AGAUUAUAGUAUAACUUGUUG    AAAAGGUUU C  A UUA    A                     -AUU         A CA
Stem-loop sequence	CGAGGCUCUAAUAUCAUGUUGAACAACCAAUUUUUCUAAAAGCUUAACCAUUUGGAAAAUUAGUUGUUCAAUAUGAUAUUAGAACCUCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA150132.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||||||||||||||*||| targets:516   GUUCAACAUGAUAUUAGAGCAUCG   539 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_30395_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010653454.2	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||||=||||||||||||* targets:804   GUUCAACAUGGUAUUAGAGCCUCA   827 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC100255152 (LOC100255152), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019220658.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||||=||||||||||||* targets:1064   GUUCAACAUGGUAUUAGAGCCUCA   1087 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC100255152 (LOC100255152), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019220655.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||||=||||||||||||* targets:1822   GUUCAACAUGGUAUUAGAGCCUCA   1845 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC100255152 (LOC100255152), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA134112.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||*|||||||||*||||| targets:515   GUUCAACAAGAUAUUAGAACCUCG   538 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13432_Transcript_1/10_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA134113.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||*|||||||||*||||| targets:515   GUUCAACAAGAUAUUAGAACCUCG   538 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13432_Transcript_3/10_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA134114.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||||||||*|||||||||*||||| targets:515   GUUCAACAAGAUAUUAGAACCUCG   538 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13432_Transcript_6/10_Confidence_0.440.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019224593.1	ncRNA:24   CAAGUUGUACUAUAAUCUCGGAGC   1   ||*|||||*|||||||||||||*| targets:3544   GUCCAACACGAUAUUAGAGCCUAG   3567 Target Full Sequence	2.5	PREDICTED: Vitis vinifera uncharacterized mitochondrial protein AtMg00810-like (LOC109123774), mRNA	NA	coding protein	psRNATarget