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BaseInfo

ncRNA ID novel_vvi_miR353
Species Vitis vinifera
Class miRNA
Genome position Chr7:18344008-18344080 [+]
Reference genome 12X
Source SRR1528352;SRR1528356;SRR1528358;SRR1528380
Length 24
Mature sequence(if miRNA) 50 - UUAGAAAGACUAGAAACACUUCCU - 73
Stem-loop(if miRNA) --            AC        C G      UUU
  GAAGUGUUUCUA  CUUUCUAA A UUGAAG   U
  ||||||||||||  |||||||| | ||||||   U
  CUUCACAAAGAU  GAAAGAUU U AACUUU   U
UC            CA        A G      CUA
Stem-loop sequence GAAGUGUUUCUAACCUUUCUAACAGUUGAAGUUUUUUAUCUUUCAAGUAUUAGAAAGACUAGAAACACUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA160601.1
ncRNA:24   UCCUUCACAAAGAUCAGAAAGAUU   1
  ||*|||||||||||||||||=|||
targets:499   AGAAAGUGUUUCUAGUCUUUUUAA   522

1.5 TSA: Vitis vinifera Locus_2766_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget
KA138578.1
ncRNA:24   UCCUUCACAAAGAUCAGAAAGAUU   1
  |**|||||||||||||*|||||||
targets:2269   AUAAAGUGUUUCUAGUAUUUCUAA   2292

1.5 TSA: Vitis vinifera Locus_5525_Transcript_9/10_Confidence_0.405.Vivi mRNA sequence NA coding protein psRNATarget