ncRNA ID | novel_vvi_miR349 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr6:21213324-21213401 [+] |
Reference genome | 12X |
Source | SRR1528352 |
Length | 21 |
Mature sequence(if miRNA) | 58 - AAUCAAAGAGAUGAAAAUGCA - 78 |
Stem-loop(if miRNA) |
--                                  ACC   CAUUUUCAUCUCUUUGAUUGAAAUAAAUUUGAAG   U   ||||||||||||||||||||||||||||||||||   GUAAAAGUAGAGAAACUAACUUUAUUUAAACUUC   A AC                                  GAG |
Stem-loop sequence | CAUUUUCAUCUCUUUGAUUGAAAUAAAUUUGAAGACCUAGAGCUUCAAAUUUAUUUCAAUCAAAGAGAUGAAAAUGCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA155303.1 |
|
1.5 | TSA: Vitis vinifera Locus_10161_Transcript_3/4_Confidence_0.625.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA155304.1 |
|
1.5 | TSA: Vitis vinifera Locus_10161_Transcript_4/4_Confidence_0.625.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_002271223.4 |
|
2.5 | PREDICTED: Vitis vinifera stachyose synthase (LOC100245269), mRNA | NA | coding protein | psRNATarget |