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BaseInfo

ncRNA ID novel_vvi_miR349
Species Vitis vinifera
Class miRNA
Genome position Chr6:21213324-21213401 [+]
Reference genome 12X
Source SRR1528352
Length 21
Mature sequence(if miRNA) 58 - AAUCAAAGAGAUGAAAAUGCA - 78
Stem-loop(if miRNA) --                                  ACC
  CAUUUUCAUCUCUUUGAUUGAAAUAAAUUUGAAG   U
  ||||||||||||||||||||||||||||||||||
  GUAAAAGUAGAGAAACUAACUUUAUUUAAACUUC   A
AC                                  GAG
Stem-loop sequence CAUUUUCAUCUCUUUGAUUGAAAUAAAUUUGAAGACCUAGAGCUUCAAAUUUAUUUCAAUCAAAGAGAUGAAAAUGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA155303.1
ncRNA:21   ACGUAAAAGUAGAGAAACUAA   1
  **|||||||||||||||||*|
targets:1950   CUCAUUUUCAUCUCUUUGAGU   1970

1.5 TSA: Vitis vinifera Locus_10161_Transcript_3/4_Confidence_0.625.Vivi mRNA sequence NA coding protein psRNATarget
KA155304.1
ncRNA:21   ACGUAAAAGUAGAGAAACUAA   1
  **|||||||||||||||||*|
targets:1558   CUCAUUUUCAUCUCUUUGAGU   1578

1.5 TSA: Vitis vinifera Locus_10161_Transcript_4/4_Confidence_0.625.Vivi mRNA sequence NA coding protein psRNATarget
XM_002271223.4
ncRNA:21   ACGUAAAAGUAGAGAAACUAA   1
  *||*|||||||||*|||||||
targets:3615   AGCUUUUUCAUCUGUUUGAUU   3635

2.5 PREDICTED: Vitis vinifera stachyose synthase (LOC100245269), mRNA NA coding protein psRNATarget