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BaseInfo

ncRNA ID novel_vvi_miR347
Species Vitis vinifera
Class miRNA
Genome position Chr6:9137268-9137436 [+]
Reference genome 12X
Source SRR1528352;SRR1528357;SRR1528366;SRR1528372;SRR1528374;SRR1528389;SRR1528391;SRR1528396;SRR1528404;SRR1528407;SRR1528409;SRR1528410;SRR1528416;SRR1528417
Length 20
Mature sequence(if miRNA) 150 - UUGGACUGAAGGGAGCUCCC - 169
Stem-loop(if miRNA) --                 CU      UG  UU      UU  A   G  G   AC        U  AA        AAUG   AU
  GAGCUUCCUUCAGUCCA  CAUGGA  GG  AGGGGU  GG UUA CU CCG  UCAUUCAU CA  CACAGUAG    GAA  G
  |||||||||||||||||  ||||||  ||  ||||||  || ||| || |||  |||||||| ||  ||||||||    |||
  CUCGAGGGAAGUCAGGU  GUGUCU  UC  UUCCUA  UU AAU GA GGC  AGUAAGUG GU  GUGUCAUC    UUU  G
CC                 UC      GU  UU      CU  A   G  G   GU        U  AA        ---A   GA
Stem-loop sequence GAGCUUCCUUCAGUCCACUCAUGGAUGGGUUAGGGGUUUGGAUUAGCUGCCGACUCAUUCAUUCAAACACAGUAGAAUGGAAAUGGAGUUUACUACUGUGAAUGUGUGAAUGAUGCGGGAGGUAAAUUUCAUCCUUUUCUUGUCUGUGCUUGGACUGAAGGGAGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA139082.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:771   AGGAGCUCCCUUCAGUCCAA   790

0.0 TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence NA coding protein psRNATarget
KA139083.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:2081   AGGAGCUCCCUUCAGUCCAA   2100

0.0 TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence NA coding protein psRNATarget
KA139084.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:2928   AGGAGCUCCCUUCAGUCCAA   2947

0.0 TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence NA coding protein psRNATarget
KX639825.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:957   UGGAGCUCCCUUCACUCCAA   976

1.5 UNVERIFIED: Vitis vinifera GAMYB-like mRNA, complete sequence NA coding protein psRNATarget
XM_019217706.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1076   UGGAGCUCCCUUCACUCCAA   1095

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X7, mRNA NA coding protein psRNATarget
XM_019217705.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1430   UGGAGCUCCCUUCACUCCAA   1449

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X6, mRNA NA coding protein psRNATarget
XM_019217704.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1437   UGGAGCUCCCUUCACUCCAA   1456

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X5, mRNA NA coding protein psRNATarget
KA143670.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1423   UGGAGCUCCCUUCACUCCAA   1442

1.5 TSA: Vitis vinifera Locus_3605_Transcript_9/9_Confidence_0.444.Vivi mRNA sequence NA coding protein psRNATarget
XM_010647229.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1482   UGGAGCUCCCUUCACUCCAA   1501

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010647226.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1489   UGGAGCUCCCUUCACUCCAA   1508

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X3, mRNA NA coding protein psRNATarget
XM_002275810.4
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1749   UGGAGCUCCCUUCACUCCAA   1768

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010647228.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1818   UGGAGCUCCCUUCACUCCAA   1837

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X2, mRNA NA coding protein psRNATarget
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