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BaseInfo

ncRNA ID novel_vvi_miR336
Species Vitis vinifera
Class miRNA
Genome position Chr3:7548965-7549052 [-]
Reference genome 12X
Source SRR1528352
Length 23
Mature sequence(if miRNA) 66 - AUCUUUUGUUCUAGGAAAUAUCU - 88
Stem-loop(if miRNA) --    U                C        U  AAAUAUCAU
  AUCU UUGUUCUAGGAAAUAU UUCAUCAG UG         A
  |||| |||||||||||||||| |||||||| ||
  UAGA AACAAGGUCCUUUAUA AAGUAGUC AG         U
UA    U                A        C  UACCUCUUA
Stem-loop sequence AUCUUUUGUUCUAGGAAAUAUCUUCAUCAGUUGAAAUAUCAUAUAUUCUCCAUGACCUGAUGAAAAUAUUUCCUGGAACAAUAGAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA169698.1
ncRNA:23   UCUAUAAAGGAUCUUGUUUUCUA   1
  *||||*||*|||||||||||||*
targets:1692   UGAUAAUUACUAGAACAAAAGAG   1714

3.0 TSA: Vitis vinifera Locus_3480_Transcript_2/4_Confidence_0.769.Vivi mRNA sequence NA coding protein psRNATarget