| ncRNA ID | ath-miR391-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:24293093-24293298 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 68 - UUCGCAGGAGAGAUAGCGCCA - 88 |
| Stem-loop(if miRNA) |
-- CACAU G ---- CU U A G U AAC A - AU U C G C -----CU UAGA GUGAUUA ACAA UGG UCUUG UCU CU U GU UUAA UGCA AUA AAG UUGCU CG AGGAGAGAUA CG CAUCAC CUUCU |||| ||||||| |||| ||| ||||| ||| || | || |||| |||| ||| ||| ||||| || |||||||||| || |||||| ||||A AUCU CACUAAU UGUU ACU GGAAC AGA GA G CA AAUU ACGU UAU UUC AACGA GC UCCUCUCUAU GC GUGGUG GAAGA CC -AACU G UUAU -U - - G U -CU A A CU U A G A AUCAAUU |
| Stem-loop sequence | UAGAGUGAUUACACAUACAAGUGGUCUUGCUUCUUCUAUGGUUUUAAAACUGCAAAUAAAGAUUUGCUUCGCAGGAGAGAUAGCGCCAUCACCUCUUCUAAGAAGUUAACUAGUGGUGACGGUAUCUCUCCUACGUAGCAAUCCUUAUAUAUGCAUCUUAAUACGGAGAGAUCAAGGUAUUUCAGUUGUUCAAUAAUCACCCUCUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001341980.1 |
|
3.0 | Arabidopsis thaliana autoinhibited Ca(2+)-ATPase 10 (ACA10), partial mRNA | autoinhibited Ca(2+)-ATPase 10(ACA10) | coding protein | psRNATarget | |||||||||
| NM_119136.4 |
|
3.0 | Arabidopsis thaliana autoinhibited Ca(2+)-ATPase 10 (ACA10), mRNA | autoinhibited Ca(2+)-ATPase 10(ACA10) | coding protein | psRNATarget |
| 1 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 2 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |