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BaseInfo

ncRNA ID lus-miR172e
Species Linum usitatissimum
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - GGAAUCUUGAUGAUGCUGCAG - NA
Stem-loop(if miRNA)     UCACAACAAUAAC  C  C  C    UA   G                A   -    ACAAAGGC     UAAAAUAAAAGAGCUUAUCUUUAUAAGCU
GGGU             AG CA UG UUGC  UUG AGCAUCAUCAAGAUUC CAA ACCC        AAAGU                             U
||||             || || || ||||  ||| |||||||||||||||| ||| ||||        |||||
UCCA             UC GU AC AACG  GAC UCGUAGUAGUUCUAAG GUU UGGG        CGGGU                             U
    -------------  C  C  U    GC   G                G   A    ------GG     ACUUACUAAACCCGUUUUCACUUUUUUUU
Stem-loop sequence GGGUUCACAACAAUAACAGCCACUGCUUGCUAUUGGAGCAUCAUCAAGAUUCACAAACCCACAAAGGCAAAGUUAAAAUAAAAGAGCUUAUCUUUAUAAGCUUUUUUUUUUUCACUUUUGCCCAAAUCAUUCAUGGGCGGGGGUAUUGGGAAUCUUGAUGAUGCUGCAGCGGCAAUCACUGCCUACCU

Reference

1 PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes";
Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY;
Planta. 237:1149-1161(2013).