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BaseInfo

ncRNA ID novel_vvi_miR323
Species Vitis vinifera
Class miRNA
Genome position Chr16:18836600-18836688 [+]
Reference genome 12X
Source SRR1528352;SRR1528364;SRR1528365;SRR1528370;SRR1528378;SRR1528379;SRR1528405;SRR1528407;SRR1528410
Length 21
Mature sequence(if miRNA) 1 - CGACACGAAGAAACGAAAGCC - 21
Stem-loop(if miRNA) --                     --   CAAU     C  AGAGA
  CGACACGAAGAAACGAAAGCC  GGC    GCAGU CG     U
  |||||||||||||||||||||  |||    ||||| ||     C
  GCUGUGCUUCUUUGUUUUCGG  CUG    UGUCA GC     A
UG                     GU   AGCU     A  GACAC
Stem-loop sequence CGACACGAAGAAACGAAAGCCGGCCAAUGCAGUCCGAGAGAUCACACAGCGAACUGUUCGAGUCUGGGCUUUUGUUUCUUCGUGUCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA148542.1
ncRNA:21   CCGAAAGCAAAGAAGCACAGC   1
  ||||||=||||||||||||||
targets:569   GGCUUUUGUUUCUUCGUGUCG   589

1.0 TSA: Vitis vinifera Locus_27955_Transcript_1/2_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget