ncRNA ID | novel_vvi_miR322 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr16:5515005-5515121 [+] |
Reference genome | 12X |
Source | SRR1528352;SRR1528353;SRR1528371;SRR1528389;SRR1528391;SRR1528405 |
Length | 24 |
Mature sequence(if miRNA) | 94 - GCCACUCUGGGUCGCUUUGGCACC - 117 |
Stem-loop(if miRNA) |
--                        ------CC      -UU     --UC  AU     CAA   UGCCAAAGCGAUCCAGAGUGGCCU        CCAGGA   CGAAC    GG  GGUGA   G   ||||||||||||||||||||||||        ||||||   |||||    ||  |||||   ACGGUUUCGCUGGGUCUCACCGGG        GGUCCU   GUUUG    CC  CCAUU   G CC                        UCUACCAU      CCC     UAUU  --     CUC |
Stem-loop sequence | UGCCAAAGCGAUCCAGAGUGGCCUCCCCAGGAUUCGAACUCGGAUGGUGACAAGGCUCUUACCCCUUAUGUUUGCCCUCCUGGUACCAUCUGGGCCACUCUGGGUCGCUUUGGCACC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_019221955.1 |
|
1.5 | PREDICTED: Vitis vinifera receptor-like protein kinase (LOC100259600), mRNA | NA | coding protein | psRNATarget |