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BaseInfo

ncRNA ID novel_vvi_miR322
Species Vitis vinifera
Class miRNA
Genome position Chr16:5515005-5515121 [+]
Reference genome 12X
Source SRR1528352;SRR1528353;SRR1528371;SRR1528389;SRR1528391;SRR1528405
Length 24
Mature sequence(if miRNA) 94 - GCCACUCUGGGUCGCUUUGGCACC - 117
Stem-loop(if miRNA) --                        ------CC      -UU     --UC  AU     CAA
  UGCCAAAGCGAUCCAGAGUGGCCU        CCAGGA   CGAAC    GG  GGUGA   G
  ||||||||||||||||||||||||        ||||||   |||||    ||  |||||
  ACGGUUUCGCUGGGUCUCACCGGG        GGUCCU   GUUUG    CC  CCAUU   G
CC                        UCUACCAU      CCC     UAUU  --     CUC
Stem-loop sequence UGCCAAAGCGAUCCAGAGUGGCCUCCCCAGGAUUCGAACUCGGAUGGUGACAAGGCUCUUACCCCUUAUGUUUGCCCUCCUGGUACCAUCUGGGCCACUCUGGGUCGCUUUGGCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019221955.1
ncRNA:24   CCACGGUUUCGCUGGGUCUCACCG   1
  |||||||||||||||||*||||||
targets:1698   GGUGCCAAAGCGACCCAUAGUGGC   1721

1.5 PREDICTED: Vitis vinifera receptor-like protein kinase (LOC100259600), mRNA NA coding protein psRNATarget