ncRNA ID | novel_vvi_miR319 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr15:4452586-4452684 [+] |
Reference genome | 12X |
Source | SRR1528352;SRR1528358;SRR1528380 |
Length | 23 |
Mature sequence(if miRNA) | 1 - CCUGAUUGAUGAUCAAGGAGCCU - 23 |
Stem-loop(if miRNA) |
--      U          GA   U           CC     A         CCUGAU GAUGAUCAAG  GCC AGAAGAAAUUG  GAAUG GAAAUUG   |||||| ||||||||||  ||| |||||||||||  ||||| ||||||C   GGACUA CUACUAGUUC  UGG UCUUUUUUAAC  CUUAC CUUUAGU AU      U          --   C           UA     A       |
Stem-loop sequence | CCUGAUUGAUGAUCAAGGAGCCUAGAAGAAAUUGCCGAAUGAGAAAUUGCUGAUUUCACAUUCAUCAAUUUUUUCUCGGUCUUGAUCAUCUAUCAGGUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010655137.2 |
|
2.5 | PREDICTED: Vitis vinifera cytosolic ascorbate peroxidase (APX), transcript variant X1, mRNA | NA | coding protein | psRNATarget |