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BaseInfo

ncRNA ID novel_vvi_miR315
Species Vitis vinifera
Class miRNA
Genome position Chr15:4364422-4364520 [-]
Reference genome 12X
Source SRR1528352;SRR1528380
Length 23
Mature sequence(if miRNA) 77 - CCUGAUUGAUGAUCAAGGAGCCU - 99
Stem-loop(if miRNA) --      U          GA   U           CC     A      
  CCUGAU GAUGAUCAAG  GCC AGAAGAAAUUG  GAAUG GAAAUUG
  |||||| ||||||||||  ||| |||||||||||  ||||| ||||||C
  GGACUA CUACUAGUUC  UGG UCUUUUUUAAC  CUUAC CUUUAGU
AU      U          --   C           UA     A      
Stem-loop sequence CCUGAUUGAUGAUCAAGGAGCCUAGAAGAAAUUGCCGAAUGAGAAAUUGCUGAUUUCACAUUCAUCAAUUUUUUCUCGGUCUUGAUCAUCUAUCAGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010655137.2
ncRNA:23   UCCGAGGAACUAGUAGUUAGUCC   1
  *||**||||||||||||||||*|
targets:1181   UGGGACCUUGAUCAUCAAUCAUG   1203

2.5 PREDICTED: Vitis vinifera cytosolic ascorbate peroxidase (APX), transcript variant X1, mRNA NA coding protein psRNATarget