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BaseInfo

ncRNA ID novel_vvi_miR314
Species Vitis vinifera
Class miRNA
Genome position Chr15:10579552-10579687 [-]
Reference genome 12X
Source SRR1528352;SRR1528353;SRR1528354;SRR1528361
Length 21
Mature sequence(if miRNA) 116 - UAGUUUUUUUGGUUGGCUUCC - 136
Stem-loop(if miRNA) --       UUU   UG   UCC       UUAUU      UUU    --U      -U   --U      UG
  UAGUUUU   GGU  GCU   AGAGCUG     UUCUAG   AGCU   UUAGAG  UAG   UUUUGG  U
  |||||||   |||  |||   |||||||     ||||||   ||||   ||||||  |||   ||||||  G
  GUCGAAA   UCG  UGA   UUUUGAU     GAGAUU   UCGA   GAUCUU  AUU   GAGACC  C
UU       CCU   GU   UUU       ----U      --U    UUU      UU   GUU      UU
Stem-loop sequence UAGUUUUUUUGGUUGGCUUCCAGAGCUGUUAUUUUCUAGUUUAGCUUUUAGAGUUAGUUUUUGGUGUGCUUCCAGAGUUGUUAUUUUCUAGUUUAGCUUUUAGAGUUAGUUUUUUUAGUUGGCUUCCAAAGCUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA155981.1
ncRNA:21   CCUUCGGUUGGUUUUUUUGAU   1
  **|||||||||||||=||||*
targets:581   UCAAGCCAACCAAAAGAACUU   601

2.5 TSA: Vitis vinifera Locus_7577_Transcript_10/10_Confidence_0.289.Vivi mRNA sequence NA coding protein psRNATarget