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BaseInfo

ncRNA ID novel_vvi_miR312
Species Vitis vinifera
Class miRNA
Genome position Chr11:14277746-14277832 [-]
Reference genome 12X
Source SRR1528352;SRR1528359;SRR1528372;SRR1528397
Length 24
Mature sequence(if miRNA) 1 - UAACCUUGUAGAUGCGUUUUAAAG - 24
Stem-loop(if miRNA) --   U     -C     U   A     GA   AGUU    -    U
  UUG GAUGU  CUACA AGG UAGGA  GAA    CCUA ACGU A
  ||| |||||  ||||| ||| |||||  |||    |||| |||| U
  AAU UUGCG  GAUGU UCC AUUCU  CUU    GGGU UGUA A
GA   U     UA     -   A     -A   ----    A    U
Stem-loop sequence UUGUGAUGUCCUACAUAGGAUAGGAGAGAAAGUUCCUAACGUUAUAUAUGUAUGGGUUCAUCUUAACCUUGUAGAUGCGUUUUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA142928.1
ncRNA:24   GAAAUUUUGCGUAGAUGUUCCAAU   1
  ||||||||=||||=||||||||||
targets:1410   CUUUAAAAUGCAUUUACAAGGUUA   1433

2.5 TSA: Vitis vinifera Locus_12121_Transcript_6/10_Confidence_0.600.Vivi mRNA sequence NA coding protein psRNATarget