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BaseInfo

ncRNA ID novel_vvi_miR305
Species Vitis vinifera
Class miRNA
Genome position Chr13:11171885-11171964 [-]
Reference genome 12X
Source SRR1528351;SRR1528361;SRR1528368;SRR1528370;SRR1528371;SRR1528372;SRR1528376;SRR1528382;SRR1528386;SRR1528389;SRR1528391;SRR1528392;SRR1528394;SRR1528404;SRR1528405;SRR1528406;SRR1528407;SRR1528408;SRR1528409;SRR1528416
Length 24
Mature sequence(if miRNA) 57 - GUUAGAGGAGAGUGGAUGUAGGUC - 80
Stem-loop(if miRNA) ---GU   A      U       GG -    -UCG   UGA
     UAG GGAGAG GGAUGUA  U CGGG    UGU   A
     ||| |||||| |||||||  | ||||    |||   C
     AUC CUUCUC CUUACGU  G GUUC    AUA   C
UUCUC   C      U       UU U    UAAA   UUA
Stem-loop sequence GUUAGAGGAGAGUGGAUGUAGGUCGGGUCGUGUUGAACCAUUAUAAAAUCUUGUGUUUGCAUUCUCUCUUCCCUACUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA157323.1
ncRNA:24   CUGGAUGUAGGUGAGAGGAGAUUG   1
  |=||||||||||||||||||||=|
targets:42   GGCCUACAUCCACUCUCCUCUAGC   65

1.5 TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget