ncRNA ID | novel_vvi_miR305 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr13:11171885-11171964 [-] |
Reference genome | 12X |
Source | SRR1528351;SRR1528361;SRR1528368;SRR1528370;SRR1528371;SRR1528372;SRR1528376;SRR1528382;SRR1528386;SRR1528389;SRR1528391;SRR1528392;SRR1528394;SRR1528404;SRR1528405;SRR1528406;SRR1528407;SRR1528408;SRR1528409;SRR1528416 |
Length | 24 |
Mature sequence(if miRNA) | 57 - GUUAGAGGAGAGUGGAUGUAGGUC - 80 |
Stem-loop(if miRNA) |
---GU   A      U       GG -    -UCG   UGA      UAG GGAGAG GGAUGUA  U CGGG    UGU   A      ||| |||||| |||||||  | ||||    |||   C      AUC CUUCUC CUUACGU  G GUUC    AUA   C UUCUC   C      U       UU U    UAAA   UUA |
Stem-loop sequence | GUUAGAGGAGAGUGGAUGUAGGUCGGGUCGUGUUGAACCAUUAUAAAAUCUUGUGUUUGCAUUCUCUCUUCCCUACUCUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA157323.1 |
|
1.5 | TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget |