ncRNA ID | lus-miR172c |
Species | Linum usitatissimum |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - AGAAUCUUGAUGAUGCUGCAU - NA |
Stem-loop(if miRNA) |
         --CG  A           U         A   ACUUAU  A     UC  -        AC AGUCAAUAU    GC GAUGCGGCAUC UCAAGAUUC CAA      CC AGCCC  CC AUGACCGA  C |||||||||    || ||||||||||| ||||||||| |||      || |||||  || |||||||| UCGGUUAUA    CG CUACGUCGUAG AGUUCUAAG GUU      GG UUGGG  GG UGCUGGCU  G          UAGA  G           U         A   -AUUUU  A     UU  C        AA |
Stem-loop sequence | AGUCAAUAUCGGCAGAUGCGGCAUCUUCAAGAUUCACAAACUUAUCCAAGCCCUCCCAUGACCGAACCGAAUCGGUCGUCGGUUGGGUUAGGUUUUAUUGAGAAUCUUGAUGAUGCUGCAUCGGCAGAUAUAUUGGCU |
1 | PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes"; Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY; Planta. 237:1149-1161(2013). |