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BaseInfo

ncRNA ID novel_vvi_miR296
Species Vitis vinifera
Class miRNA
Genome position Chr11:16658114-16658192 [-]
Reference genome 12X
Source SRR1528351;SRR1528368;SRR1528373;SRR1528381;SRR1528382;SRR1528385;SRR1528405;SRR1528407;SRR1528417
Length 24
Mature sequence(if miRNA) 56 - GUUAGAGGAGAGUGGAUGUAGGUC - 79
Stem-loop(if miRNA) -GU   AG     U       --     GGUUGCAUCGAA
   UAG  GAGAG GGAUGUA  GGUCG            C
   |||  ||||| |||||||  |||||
   AUC  UUCUC CUUACGU  AUGUU            C
UUC   CU     U       UU     CUAAAAAUAUUA
Stem-loop sequence GUUAGAGGAGAGUGGAUGUAGGUCGGGUUGCAUCGAACCAUUAUAAAAAUCUUGUAUUUGCAUUCUCUCUUUCCUACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA157323.1
ncRNA:24   CUGGAUGUAGGUGAGAGGAGAUUG   1
  |=||||||||||||||||||||=|
targets:42   GGCCUACAUCCACUCUCCUCUAGC   65

1.5 TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget