ncRNA ID | novel_vvi_miR285 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr5:1699286-1699362 [-] |
Reference genome | 12X |
Source | SRR1528351;SRR1528370 |
Length | 24 |
Mature sequence(if miRNA) | 54 - CCUAAGAUCACUGUCAAAUGGACU - 77 |
Stem-loop(if miRNA) |
--C       C   G       G       U    UCU    CUAAGAU ACU UCAAAUG ACUCUUA UGUU   A    ||||||| ||| ||||||| ||||||| ||||   U    GAUUUUA UGA AGUUUAC UGAGAAU AUAG   U AAA       A   G       G       C    UAA |
Stem-loop sequence | CCUAAGAUCACUGUCAAAUGGACUCUUAUUGUUUCUAUUAAUGAUACUAAGAGUGCAUUUGAGAGUAAUUUUAGAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA159796.1 |
|
2.5 | TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
FQ379179.1 |
|
2.5 | Vitis vinifera clone SS0AEB11YD14 | NA | coding protein | psRNATarget |