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BaseInfo

ncRNA ID novel_vvi_miR285
Species Vitis vinifera
Class miRNA
Genome position Chr5:1699286-1699362 [-]
Reference genome 12X
Source SRR1528351;SRR1528370
Length 24
Mature sequence(if miRNA) 54 - CCUAAGAUCACUGUCAAAUGGACU - 77
Stem-loop(if miRNA) --C       C   G       G       U    UCU
   CUAAGAU ACU UCAAAUG ACUCUUA UGUU   A
   ||||||| ||| ||||||| ||||||| ||||   U
   GAUUUUA UGA AGUUUAC UGAGAAU AUAG   U
AAA       A   G       G       C    UAA
Stem-loop sequence CCUAAGAUCACUGUCAAAUGGACUCUUAUUGUUUCUAUUAAUGAUACUAAGAGUGCAUUUGAGAGUAAUUUUAGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA159796.1
ncRNA:24   UCAGGUAAACUGUCACUAGAAUCC   1
  |||*|=||||||||||||=|||||
targets:2582   AGUGCGUUUGACAGUGAUUUUAGG   2605

2.5 TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence NA coding protein psRNATarget
FQ379179.1
ncRNA:24   UCAGGUAAACUGUCACUAGAAUCC   1
  |||--|||||||||||||=||||*
targets:1234   AGU--AUUUGACAGUGAUUUUAGA   1255

2.5 Vitis vinifera clone SS0AEB11YD14 NA coding protein psRNATarget