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BaseInfo

ncRNA ID	novel_vvi_miR281
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:3550086-3550206 [+]
Reference genome	12X
Source	SRR1048204
Length	24
Mature sequence(if miRNA)	1 - CGUUUGAUAGUGAUUAUAGGAAGC - 24
Stem-loop(if miRNA)	--C              A                     C  AU    C    UU    AU    GUUUGAUAGUGAUU UAGGAAGCGUUUCUAACUUUU UA  ACUU AAAU  UUUU  C    |||||||||||||| ||||||||||||||||||||| ||  |||| ||||  ||||    CAAAUUAUUACUAA AUCUUUCGUAAAGGUUGGAAA AU  UGAA UUUG  GAGA  A AAA              A                     A  -C    C    UU    AA
Stem-loop sequence	CGUUUGAUAGUGAUUAUAGGAAGCGUUUCUAACUUUUCUAAUACUUCAAAUUUUUUUAUCAAAAGAGUUGUUUCAAGUCUAAAAAGGUUGGAAAUGCUUUCUAAAAUCAUUAUUAAACAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA141295.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *|||||||*||||||||||||||* targets:671   ACUUCCUAAAAUCACUAUCAAACA   694 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_7662_Transcript_5/10_Confidence_0.136.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146990.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *|||||||*||||||||||||||* targets:3470   ACUUCCUAAAAUCACUAUCAAACA   3493 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_5272_Transcript_7/11_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA168752.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   |=||=|||*||||||||||||||* targets:1239   GUUUUCUAAAAUCACUAUCAAACA   1262 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_612_Transcript_1/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019216909.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *=||||||*||||||||||||||* targets:832   AUUUCCUAGAAUCACUAUCAAACA   855 Target Full Sequence	2.0	PREDICTED: Vitis vinifera peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (LOC100261657), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002267790.3	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *=||||||*||||||||||||||* targets:860   AUUUCCUAGAAUCACUAUCAAACA   883 Target Full Sequence	2.0	PREDICTED: Vitis vinifera peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (LOC100261657), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010654642.2	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   ||||||||*||||||||*|||||| targets:2096   GCUUCCUAGAAUCACUACCAAACG   2119 Target Full Sequence	2.5	PREDICTED: Vitis vinifera alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (LOC100264660), mRNA	NA	coding protein	psRNATarget
KA155688.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   ||||=|||*|||||||*||||||| targets:1548   GCUUUCUAGAAUCACUCUCAAACG   1571 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13686_Transcript_2/6_Confidence_0.571.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_003635467.3	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *=||=*||||||||||=||||||| targets:17   AUUUUGUAUAAUCACUGUCAAACG   40 Target Full Sequence	2.5	PREDICTED: Vitis vinifera subtilisin-like protease SBT5.4 (LOC100853051), partial mRNA	NA	coding protein	psRNATarget
KA166769.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *|||||||*|=||||||||||||* targets:4672   ACUUCCUAGAGUCACUAUCAAACA   4695 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_5976_Transcript_9/10_Confidence_0.484.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165410.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *=|||||**||||||||||||||* targets:70   AUUUCCUUAAAUCACUAUCAAACA   93 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_18857_Transcript_3/9_Confidence_0.188.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165411.1	ncRNA:24   CGAAGGAUAUUAGUGAUAGUUUGC   1   *=|||||**||||||||||||||* targets:70   AUUUCCUUAAAUCACUAUCAAACA   93 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_18857_Transcript_7/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget