Search result

BaseInfo

ncRNA ID	novel_vvi_miR275
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:6516965-6517137 [+]
Reference genome	12X
Source	SRR1528351;SRR1528378;SRR1528381;SRR1048208;SRR1528389;SRR1528389;SRR1528399;SRR1528401;SRR1528409;SRR1528412;SRR1528413;SRR2029783;SRR2029784;SRR1049295
Length	21
Mature sequence(if miRNA)	153 - CUGAAGUGUUUGGGGGAACUC - 173
Stem-loop(if miRNA)	--       UG C       C      CCUUCUCUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN   GUUCCCU  A CACUUCA UGGGGA                                                           N   |||||||  | ||||||| ||||||                                                           N   CAAGGGG  U GUGAAGU AUCCCU                                                           N CU       GU U       C      CUGUAAUAUUGAUCUCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Stem-loop sequence	GUUCCCUUGACCACUUCACUGGGGACCUUCUCUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUCUAGUUAUAAUGUCUCCCUACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA152876.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||*||=|||||||||||||| targets:128   GAGCUCUCCCAAACACUUCAG   148 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_15568_Transcript_1/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010665998.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||*||=|||||||||||||| targets:157   GAGCUCUCCCAAACACUUCAG   177 Target Full Sequence	2.0	PREDICTED: Vitis vinifera low affinity sulfate transporter 3 (LOC100252269), mRNA	NA	coding protein	psRNATarget
KA152875.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||*||=|||||||||||||| targets:325   GAGCUCUCCCAAACACUUCAG   345 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_15568_Transcript_2/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010654522.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:383   AAGUUCUCCCAAACACUUCAA   403 Target Full Sequence	2.0	PREDICTED: Vitis vinifera low affinity sulfate transporter 3 (LOC100257574), mRNA	NA	coding protein	psRNATarget