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BaseInfo

ncRNA ID novel_vvi_miR261
Species Vitis vinifera
Class miRNA
Genome position Chr14:21339681-21339737 [-]
Reference genome 12X
Source SRR1528351;SRR1528364;SRR1528368;SRR1528381;SRR1528386;SRR1528394;SRR1528405;SRR1528408;SRR1528409;SRR1528410;SRR1528412;SRR1528417
Length 24
Mature sequence(if miRNA) 1 - GUGAUUGACAGUGAUUUUAGGAAG - 24
Stem-loop(if miRNA) --                  A      C
  UUCUAAAAUCAUUGUCAA CACACU U
  |||||||||||||||||| |||||| A
  AGGAUUUUAGUGACAGUU GUGUGA A
GA                  A      A
Stem-loop sequence UUCUAAAAUCAUUGUCAAACACACUCUAAAAGUGUGAUUGACAGUGAUUUUAGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA166591.1
ncRNA:24   GAAGGAUUUUAGUGACAGUUAGUG   1
  ||||||||||||||||||||*|||
targets:889   CUUCCUAAAAUCACUGUCAAACAC   912

1.5 TSA: Vitis vinifera Locus_1103_Transcript_2/9_Confidence_0.406.Vivi mRNA sequence NA coding protein psRNATarget
KA171163.1
ncRNA:24   GAAGGAUUUUAGUGACAGUUAGUG   1
  =||=*|||||||||||||||*|||
targets:996   UUUUGUAAAAUCACUGUCAAACAC   1019

1.5 TSA: Vitis vinifera Locus_6292_Transcript_2/4_Confidence_0.636.Vivi mRNA sequence NA coding protein psRNATarget