ncRNA ID | novel_vvi_miR261 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr14:21339681-21339737 [-] |
Reference genome | 12X |
Source | SRR1528351;SRR1528364;SRR1528368;SRR1528381;SRR1528386;SRR1528394;SRR1528405;SRR1528408;SRR1528409;SRR1528410;SRR1528412;SRR1528417 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GUGAUUGACAGUGAUUUUAGGAAG - 24 |
Stem-loop(if miRNA) |
--                  A      C   UUCUAAAAUCAUUGUCAA CACACU U   |||||||||||||||||| |||||| A   AGGAUUUUAGUGACAGUU GUGUGA A GA                  A      A |
Stem-loop sequence | UUCUAAAAUCAUUGUCAAACACACUCUAAAAGUGUGAUUGACAGUGAUUUUAGGAAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA166591.1 |
|
1.5 | TSA: Vitis vinifera Locus_1103_Transcript_2/9_Confidence_0.406.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA171163.1 |
|
1.5 | TSA: Vitis vinifera Locus_6292_Transcript_2/4_Confidence_0.636.Vivi mRNA sequence | NA | coding protein | psRNATarget |