Search result

BaseInfo

ncRNA ID	novel_vvi_miR200
Species	Vitis vinifera
Class	miRNA
Genome position	Chr11:5147262-5147316 [-]
Reference genome	12X
Source	SRR1048203;SRR1048205
Length	24
Mature sequence(if miRNA)	32 - AAACAUUUUCUAAAAUCACUACCA - 55
Stem-loop(if miRNA)	--            A       AC  A   AAACAUUUUCUA AAUCACU  CA A   |||||||||||| |||||||  || U   UUUGUAAAAGAU UUAGUGA  GU G UC            C       GA  U
Stem-loop sequence	AAACAUUUUCUAAAAUCACUACCAAAUGUUGAGAGUGAUUCUAGAAAAUGUUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA139131.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   ||**|||||||||||||||||||| targets:2289   UGACAGUGAUUUUAGAAAAUGUUU   2312 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_5005_Transcript_7/10_Confidence_0.523.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002281561.3	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   |||||*|||||||||||||||||| targets:1811   UGGUAAUGAUUUUAGAAAAUGUUU   1834 Target Full Sequence	1.0	PREDICTED: Vitis vinifera indole-3-pyruvate monooxygenase YUCCA6 (LOC100252539), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA165168.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   |||*|*|||||||||||||||||| targets:3038   UGGGAAUGAUUUUAGAAAAUGUUU   3061 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_3435_Transcript_5/8_Confidence_0.391.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170970.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   ||||||||||||||||||=||||| targets:160   UGGUAGUGAUUUUAGAAAGUGUUU   183 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_17927_Transcript_6/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170969.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   ||||||||||||||||||=||||| targets:160   UGGUAGUGAUUUUAGAAAGUGUUU   183 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_17927_Transcript_3/6_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA154839.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   *||||||||||||||||||*|||| targets:2605   CGGUAGUGAUUUUAGAAAACGUUU   2628 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ397263.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   |||*|||||||||||||||||*|| targets:1326   UGGCAGUGAUUUUAGAAAAUGCUU   1349 Target Full Sequence	1.5	Vitis vinifera clone SS0AEB7YF12	NA	coding protein	psRNATarget
KA146674.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   |*|*||||||||||||||=||||| targets:192   UAGAAGUGAUUUUAGAAAGUGUUU   215 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1161_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ379179.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   ||**|||||||||||||||||*|| targets:1240   UGACAGUGAUUUUAGAAAAUGCUU   1263 Target Full Sequence	1.5	Vitis vinifera clone SS0AEB11YD14	NA	coding protein	psRNATarget
KA168752.1	ncRNA:24   ACCAUCACUAAAAUCUUUUACAAA   1   |||*|*||||||||*||||||||| targets:1158   UGGCAAUGAUUUUAAAAAAUGUUU   1181 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_612_Transcript_1/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget