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BaseInfo

ncRNA ID novel_vvi_miR194
Species Vitis vinifera
Class miRNA
Genome position Chr2:9380500-9380618 [+]
Reference genome 12X
Source SRR1049372
Length 24
Mature sequence(if miRNA) 1 - CUAUUCAGUUAAAAGUAACCCAUU - 24
Stem-loop(if miRNA) --       GU          CCA   A              A     UUG     AUU
  CUAUUCA  UAAAAGUAAC   UUG CAUCAUCCAAUAUA UUAAA   AACUU   A
  |||||||  ||||||||||   ||| |||||||||||||| |||||   |||||   A
  GAUAAGU  AUUUUCAUUG   AAC GUAGUAGGUUGUAU GAUUU   UUGAA   U
AA       UG          UAC   C              C     UAA     CAA
Stem-loop sequence CUAUUCAGUUAAAAGUAACCCAUUGACAUCAUCCAAUAUAAUUAAAUUGAACUUAUUAAUAACAAGUUAAUUUUAGCUAUGUUGGAUGAUGCCAACAUGUUACUUUUAGUUGAAUAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA142775.1
ncRNA:24   UUACCCAAUGAAAAUUGACUUAUC   1
  ||---||||||||||||||||||*
targets:1374   AA---GUUACUUUUAACUGAAUAA   1394

1.0 TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence NA coding protein psRNATarget
KA142774.1
ncRNA:24   UUACCCAAUGAAAAUUGACUUAUC   1
  ||---||||||||||||||||||*
targets:1474   AA---GUUACUUUUAACUGAAUAA   1494

1.0 TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence NA coding protein psRNATarget