ncRNA ID | novel_vvi_miR194 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr2:9380500-9380618 [+] |
Reference genome | 12X |
Source | SRR1049372 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CUAUUCAGUUAAAAGUAACCCAUU - 24 |
Stem-loop(if miRNA) |
--       GU          CCA   A              A     UUG     AUU   CUAUUCA  UAAAAGUAAC   UUG CAUCAUCCAAUAUA UUAAA   AACUU   A   |||||||  ||||||||||   ||| |||||||||||||| |||||   |||||   A   GAUAAGU  AUUUUCAUUG   AAC GUAGUAGGUUGUAU GAUUU   UUGAA   U AA       UG          UAC   C              C     UAA     CAA |
Stem-loop sequence | CUAUUCAGUUAAAAGUAACCCAUUGACAUCAUCCAAUAUAAUUAAAUUGAACUUAUUAAUAACAAGUUAAUUUUAGCUAUGUUGGAUGAUGCCAACAUGUUACUUUUAGUUGAAUAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA142775.1 |
|
1.0 | TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA142774.1 |
|
1.0 | TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence | NA | coding protein | psRNATarget |