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BaseInfo

ncRNA ID lus-miR171a
Species Linum usitatissimum
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - AGAUUGAGCCGCGCCAAUAUC - NA
Stem-loop(if miRNA)       C          G         C  UAA  GAU      AUCAAAAU       AACAGCUCUAUAC   UU
GAAAGG GAUAUUGGUG GGUUCAAUC GA   CG   UUUUAC        UAACAGC             CCA  C
|||||| |||||||||| ||||||||| ||   ||   ||||||        |||||||             |||  A
CUUUUC CUAUAACCGC CCGAGUUAG CU   GC   AAAAUG        AUUGUUG             GGU  U
      A          G         A  CUA  -AU      -AUAUUAU       -----------GU   UC
Stem-loop sequence GAAAGGCGAUAUUGGUGGGGUUCAAUCCGAUAACGGAUUUUUACAUCAAAAUUAACAGCAACAGCUCUAUACCCAUUCAUCUUGGUGGUUGUUAUAUUAUAGUAAAAUACGAUCUCAGAUUGAGCCGCGCCAAUAUCACUUUUC

Reference

1 PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes";
Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY;
Planta. 237:1149-1161(2013).