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BaseInfo

ncRNA ID novel_vvi_miR182
Species Vitis vinifera
Class miRNA
Genome position Chr14:3011156-3011263 [-]
Reference genome 12X
Source SRR1049371;SRR1049296
Length 22
Mature sequence(if miRNA) 87 - AGAGCUGGAGGGAAAUGAGUGA - 108
Stem-loop(if miRNA) --      G A               AAA                 U  UUU  C
  AGAGCU G GGGAAAUGAGUGAAA   UUGGAAUCUCGGAGUAG CC   GA A
  |||||| | |||||||||||||||   ||||||||||||||||| ||   ||
  UUUUGG C CCCUUUGCUUACUUU   AGCCUUAGAGUCUUGUC GG   CU G
UC      A -               CGA                 C  -UC  U
Stem-loop sequence AGAGCUGGAGGGAAAUGAGUGAAAAAAUUGGAAUCUCGGAGUAGUCCUUUGACAGUUCCUGGCCUGUUCUGAGAUUCCGAAGCUUUCAUUCGUUUCCCCAGGUUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA167381.1
ncRNA:22   AGUGAG-UAAAGGGAGGUCGAGA   1
  **||||-|||||||||||||||*
targets:979   AGACUCCAUUUCCCUCCAGCUCC   1001

3.0 TSA: Vitis vinifera Locus_6687_Transcript_6/10_Confidence_0.385.Vivi mRNA sequence NA coding protein psRNATarget
KA167382.1
ncRNA:22   AGUGAG-UAAAGGGAGGUCGAGA   1
  **||||-|||||||||||||||*
targets:1047   AGACUCCAUUUCCCUCCAGCUCC   1069

3.0 TSA: Vitis vinifera Locus_6687_Transcript_3/10_Confidence_0.385.Vivi mRNA sequence NA coding protein psRNATarget