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BaseInfo

ncRNA ID novel_vvi_miR180
Species Vitis vinifera
Class miRNA
Genome position Chr13:10996315-10996368 [-]
Reference genome 12X
Source SRR1049371;SRR1049373;SRR1528359;SRR1048205;SRR1048206;SRR1048207
Length 24
Mature sequence(if miRNA) 1 - AUAGUCAAAGCCGUAGUCACCAAC - 24
Stem-loop(if miRNA) --                A       U
  UGGUGACUACGGCUUU ACUGUUU U
  |||||||||||||||| |||||||
  ACCACUGAUGCCGAAA UGAUAAA A
CA                C       A
Stem-loop sequence UGGUGACUACGGCUUUAACUGUUUUUAAAAAUAGUCAAAGCCGUAGUCACCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010658998.2
ncRNA:24   CAACCACUGAUGCCGAAACUGAUA   1
  ||||||||||||||||||||=|||
targets:3   GUUGGUGACUACGGCUUUGAUUAU   26

1.5 PREDICTED: Vitis vinifera mucin-5AC-like (LOC104880885), transcript variant X2, mRNA NA coding protein psRNATarget