Search result

BaseInfo

ncRNA ID	novel_vvi_miR175
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:6536790-6536861 [+]
Reference genome	12X
Source	SRR1048201;SRR1528351;SRR1048205;SRR1528374;SRR1048206;SRR1528389;SRR1528398;SRR1528399;SRR1528412;SRR2029784
Length	21
Mature sequence(if miRNA)	52 - CUGAAGUGUUUGGGGGAACUC - 72
Stem-loop(if miRNA)	--       UG C       C      CCU  UCUAA   GUUCCCU  A CACUUCA UGGGGA   UC     U   |||||||  | ||||||| ||||||   ||   CAAGGGG  U GUGAAGU AUCCUU   AG     U CU       GU U       C      --C  UAAUA
Stem-loop sequence	GUUCCCUUGACCACUUCACUGGGGACCUUCUCUAAUUAUAAUGACUUCCUACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA152876.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||*||=|||||||||||||| targets:128   GAGCUCUCCCAAACACUUCAG   148 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_15568_Transcript_1/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010665998.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||*||=|||||||||||||| targets:157   GAGCUCUCCCAAACACUUCAG   177 Target Full Sequence	2.0	PREDICTED: Vitis vinifera low affinity sulfate transporter 3 (LOC100252269), mRNA	NA	coding protein	psRNATarget
KA152875.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||*||=|||||||||||||| targets:325   GAGCUCUCCCAAACACUUCAG   345 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_15568_Transcript_2/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010654522.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:383   AAGUUCUCCCAAACACUUCAA   403 Target Full Sequence	2.0	PREDICTED: Vitis vinifera low affinity sulfate transporter 3 (LOC100257574), mRNA	NA	coding protein	psRNATarget