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BaseInfo

ncRNA ID novel_vvi_miR162
Species Vitis vinifera
Class miRNA
Genome position Chr6:19741744-19741838 [-]
Reference genome 12X
Source SRR1049371;SRR1049372;SRR1528357;SRR1048204;SRR1528361;SRR1528365;SRR1048205;SRR1528374;SRR1528380;SRR1048207;SRR1528381;SRR1528383;SRR1528410;SRR1528412;SRR1049291;SRR1049295
Length 24
Mature sequence(if miRNA) 1 - AGAAACACUUCCUAGAAUCACUGC - 24
Stem-loop(if miRNA) --                       AUC      A          AU
  AGUGAUUUUAGGAAGUGUUUCUA   UUUCUA UACUUGAAAA  A
  |||||||||||||||||||||||   |||||| ||||||||||  A
  UCACUAAGAUCCUUCACAAAGAU   AAAGAU AUGAACUUUU  A
CG                       GGU      C          AA
Stem-loop sequence AGUGAUUUUAGGAAGUGUUUCUAAUCUUUCUAAUACUUGAAAAAUAAAAAUUUUCAAGUACUAGAAAUGGUAGAAACACUUCCUAGAAUCACUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA166769.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  *=|||||*||||||||||||||||
targets:4593   AUAGUGAAUCUAGGAAGUGUUUCU   4616

1.0 TSA: Vitis vinifera Locus_5976_Transcript_9/10_Confidence_0.484.Vivi mRNA sequence NA coding protein psRNATarget
KA165748.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |||||||||=||||||||||||=|
targets:1694   GCAGUGAUUUUAGGAAGUGUUUUU   1717

2.5 TSA: Vitis vinifera Locus_1543_Transcript_6/7_Confidence_0.611.Vivi mRNA sequence NA coding protein psRNATarget
KA170094.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||=||||||||||||=|
targets:4082   GUAGUGAUUUUAGGAAGUGUUUUU   4105

2.5 TSA: Vitis vinifera Locus_1667_Transcript_4/5_Confidence_0.583.Vivi mRNA sequence NA coding protein psRNATarget
FQ381116.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |||||||||=||||||||*|||||
targets:1251   GCAGUGAUUUUAGGAAGUAUUUCU   1274

2.5 Vitis vinifera clone SS0ACG1YF21 NA coding protein psRNATarget
KA144717.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |||||||||=||||||||*|||||
targets:1302   GCAGUGAUUUUAGGAAGUAUUUCU   1325

2.5 TSA: Vitis vinifera Locus_1426_Transcript_1/6_Confidence_0.556.Vivi mRNA sequence NA coding protein psRNATarget
KA170970.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||=|||*||||||||||
targets:162   GUAGUGAUUUUAGAAAGUGUUUCU   185

2.5 TSA: Vitis vinifera Locus_17927_Transcript_6/6_Confidence_0.500.Vivi mRNA sequence NA coding protein psRNATarget
KA165408.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||=||*|||||||||||
targets:2996   GUAGUGAUUUUAAGAAGUGUUUCU   3019

2.5 TSA: Vitis vinifera Locus_14018_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget
KA165409.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||=||*|||||||||||
targets:3085   GUAGUGAUUUUAAGAAGUGUUUCU   3108

2.5 TSA: Vitis vinifera Locus_14018_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget
KA170969.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||=|||*||||||||||
targets:162   GUAGUGAUUUUAGAAAGUGUUUCU   185

2.5 TSA: Vitis vinifera Locus_17927_Transcript_3/6_Confidence_0.611.Vivi mRNA sequence NA coding protein psRNATarget
KA154839.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||=||*|||||||||||
targets:2779   GUAGUGAUUUUAAGAAGUGUUUCU   2802

2.5 TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence NA coding protein psRNATarget
KA159796.1
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  *||||||||=||||||||||||*|
targets:2592   ACAGUGAUUUUAGGAAGUGUUUAU   2615

2.5 TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence NA coding protein psRNATarget
KA153142.1
ncRNA:24   CGU--CACUAAGAUCCUUCACAAAGA   1
  *||--||||||=||||||||||||=|
targets:88   UCACCGUGAUUUUAGGAAGUGUUUUU   113

2.5 TSA: Vitis vinifera Locus_44328_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget
XM_002270170.3
ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1
  |=|||||||*|*||||||||||||
targets:3935   GUAGUGAUUAUCGGAAGUGUUUCU   3958

2.5 PREDICTED: Vitis vinifera WD repeat-containing protein 44 (LOC100264924), mRNA NA coding protein psRNATarget
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