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BaseInfo

ncRNA ID novel_vvi_miR150
Species Vitis vinifera
Class miRNA
Genome position Chr15:10263376-10263440 [+]
Reference genome 12X
Source SRR1049371
Length 24
Mature sequence(if miRNA) 42 - CAAUUUAAUUAUAUUGGAUGAUGU - 65
Stem-loop(if miRNA) --         C    C    A         U
  AUCAUCCAA AUAG UAAA UGAACUUGU A
  ||||||||| |||| |||| ||||||||| U
  UAGUAGGUU UAUU AUUU ACUUGAAUA C
UG         A    A    A         A
Stem-loop sequence AUCAUCCAACAUAGCUAAAAUGAACUUGUUAUCAAUAAGUUCAAUUUAAUUAUAUUGGAUGAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002275318.4
ncRNA:24   UGUAGUAGGUUAUAUUAAUUUAAC   1
  ||||||||||||||||||||||||
targets:1912   ACAUCAUCCAAUAUAAUUAAAUUG   1935

0.0 PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA NA coding protein psRNATarget