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BaseInfo

ncRNA ID novel_vvi_miR149
Species Vitis vinifera
Class miRNA
Genome position Chr15:5311404-5311483 [-]
Reference genome 12X
Source SRR1049371;SRR1049373;SRR1528359;SRR1048206;SRR1528386
Length 24
Mature sequence(if miRNA) 57 - AUAGUCAAAGCCGUAGUCACCAAC - 80
Stem-loop(if miRNA) --AUA                 C              ACU
     GUCAAAGCCGUAGUCAC AACUACGGUUUUAA   U
     ||||||||||||||||| ||||||||||||||
     CAGUUUUGGCAUUAGUG UUGGUGCCAAAAUU   A
UUUAC                 U              GAA
Stem-loop sequence AUAGUCAAAGCCGUAGUCACCAACUACGGUUUUAAACUUAAAGUUAAAACCGUGGUUUGUGAUUACGGUUUUGACCAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010658998.2
ncRNA:24   CAACCACUGAUGCCGAAACUGAUA   1
  ||||||||||||||||||||=|||
targets:3   GUUGGUGACUACGGCUUUGAUUAU   26

1.5 PREDICTED: Vitis vinifera mucin-5AC-like (LOC104880885), transcript variant X2, mRNA NA coding protein psRNATarget