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BaseInfo

ncRNA ID novel_vvi_miR148
Species Vitis vinifera
Class miRNA
Genome position Chr15:10234021-10234116 [-]
Reference genome 12X
Source SRR1049371
Length 24
Mature sequence(if miRNA) 1 - GUUUGAGUGAGUAUUUGUUAAAAG - 24
Stem-loop(if miRNA) --UGA    U       A      UACAA   --GU       AAUUAAAC
     AACA GUACUCA UCAAAC     GAU    UUAUACG        C
     |||| ||||||| ||||||     |||    |||||||        A
     UUGU UAUGAGU AGUUUG     CUA    GGUGUGC        A
GAAAA    U       G      -----   AUAU       ACAAACCU
Stem-loop sequence UGAAACAUGUACUCAAUCAAACUACAAGAUGUUUAUACGAAUUAAACCAAUCCAAACACGUGUGGUAUAAUCGUUUGAGUGAGUAUUUGUUAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010667074.2
ncRNA:24   GAAAAUUGUUUAUGAGUGAGUUUG   1
  |||||||=||||||||||||||||
targets:675   CUUUUAAUAAAUACUCACUCAAAC   698

1.0 PREDICTED: Vitis vinifera probable L-type lectin-domain containing receptor kinase S.5-like (LOC100246555), mRNA NA coding protein psRNATarget