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BaseInfo

ncRNA ID novel_vvi_miR144
Species Vitis vinifera
Class miRNA
Genome position Chr13:2577678-2577736 [-]
Reference genome 12X
Source SRR1049370
Length 24
Mature sequence(if miRNA) 36 - AUCCAACAUAACUAAACUGAACCU - 59
Stem-loop(if miRNA) --                C     C   U
  AUCCAACAUAACUAAA UGAAC UAU G
  |||||||||||||||| ||||| ||| A
  UAGGUUGUAUUGAUUU ACUUG AUA U
AG                C     A   A
Stem-loop sequence AUCCAACAUAACUAAACUGAACCUAUUGAUAAUAAGUUCACUUUAGUUAUGUUGGAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA161886.1
ncRNA:24   UCCAAGUCAAAUCAAUACAACCUA   1
  |||||||||||||||||*||||||
targets:262   AGGUUCAGUUUAGUUAUAUUGGAU   285

1.5 TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget