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BaseInfo

ncRNA ID	novel_vvi_miR141
Species	Vitis vinifera
Class	miRNA
Genome position	Chr12:13441455-13441677 [+]
Reference genome	12X
Source	SRR1049370
Length	24
Mature sequence(if miRNA)	200 - CAGCUAAAAAACAAACACCACCUU - 223
Stem-loop(if miRNA)	--   U                 U    A     A           AA                       A  C     C  C         C      C A       U   GGU GUGUUUGUUUUUUGGCU AAUA AAAAA CCAAAUAUUUU  CUUUUUCUAUUCAGCUAAAAGUA CU AUUGA AU AACCAACAU AUUAAA U AACUUAU G   ||| ||||||||||||||||| |||| ||||| |||||||||||  ||||||||||||||||||||||| || ||||| || ||||||||| |||||| | ||||||| A   CCA CACAAACAAAAAAUCGA UUAU UUUUU GGUUUAUAAAA  GAAAAAGAUAAGUCGAUUUUCAU GA UAAUU UG UUGGUUGUA UAAUUU A UUGAAUA U UU   C                 C    C     C           CC                       G  A     A  A         U      C C       A
Stem-loop sequence	GGUUGUGUUUGUUUUUUGGCUUAAUAAAAAAAACCAAAUAUUUUAACUUUUUCUAUUCAGCUAAAAGUAACUCAUUGACAUCAACCAACAUCAUUAAACUAAACUUAUUGAUAAUAAGUUCACUUUAAUUAUGUUGGUUAGUAUUAAUAAGGUACUUUUAGCUGAAUAGAAAAAGCCAAAAUAUUUGGCUUUUUCUAUUCAGCUAAAAAACAAACACCACCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA161886.1	ncRNA:24   UUCCACCACAAACAAAAAAUCGAC   1   ||*||||||||||||||||=|||* targets:172   AAAGUGGUGUUUGUUUUUUGGCUU   195 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ391120.1	ncRNA:24   UUCCACCACAAACAAAAAAUCGAC   1   |*||||||||||||||||||*||* targets:959   AUGGUGGUGUUUGUUUUUUAACUU   982 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB15YK02	NA	coding protein	psRNATarget
KA156662.1	ncRNA:24   UUCCACCACAAACAAAAAAUCGAC   1   |*|||||||||||||||||*|||* targets:943   ACGGUGGUGUUUGUUUUUUUGCUU   966 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3257_Transcript_8/10_Confidence_0.423.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA156661.1	ncRNA:24   UUCCACCACAAACAAAAAAUCGAC   1   |*|||||||||||||||||*|||* targets:869   ACGGUGGUGUUUGUUUUUUUGCUU   892 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3257_Transcript_10/10_Confidence_0.423.Vivi mRNA sequence	NA	coding protein	psRNATarget