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BaseInfo

ncRNA ID novel_vvi_miR140
Species Vitis vinifera
Class miRNA
Genome position Chr12:936424-936482 [+]
Reference genome 12X
Source SRR1049370;SRR1528365
Length 24
Mature sequence(if miRNA) 1 - AUCCAACAUAACUAAACUGAACCU - 24
Stem-loop(if miRNA) --      C   A     C     CUA   A
  AUCCAA AUA CUAAA UGAAC   UUG U
  |||||| ||| ||||| |||||   |||
  UAGGUU UAU GAUUU ACUUG   AAC A
AG      A   C     U     ---   A
Stem-loop sequence AUCCAACAUAACUAAACUGAACCUAUUGAUAACAAGUUCAUUUUAGCUAUAUUGGAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA161886.1
ncRNA:24   UCCAAGUCAAAUCAAUACAACCUA   1
  |||||||||||||||||*||||||
targets:262   AGGUUCAGUUUAGUUAUAUUGGAU   285

1.5 TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget