Search result

BaseInfo

ncRNA ID novel_vvi_miR136
Species Vitis vinifera
Class miRNA
Genome position Chr11:19800794-19800883 [-]
Reference genome 12X
Source SRR1049370
Length 21
Mature sequence(if miRNA) 1 - GCAUGAUAUGUACUUUGGUGC - 21
Stem-loop(if miRNA) --                         A         U    AAA
  ACCAAAGUACAUAUCAUGCUCUUUA GACUCCAAA UGCA   C
  ||||||||||||||||||||||||| ||||||||| ||||
  UGGUUUCAUGUAUAGUACGAGAAAU CUGAGGUUU ACGU   A
CG                         C         U    AAC
Stem-loop sequence ACCAAAGUACAUAUCAUGCUCUUUAAGACUCCAAAUUGCAAAACACAAUGCAUUUUGGAGUCCUAAAGAGCAUGAUAUGUACUUUGGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA136941.1
ncRNA:21   CGUGGUUUCAUGUAUAGUACG   1
  **|=|||=||||||||||||*
targets:891   AGAUCAAGGUACAUAUCAUGG   911

3.0 TSA: Vitis vinifera Locus_193_Transcript_8/10_Confidence_0.414.Vivi mRNA sequence NA coding protein psRNATarget