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BaseInfo

ncRNA ID	novel_vvi_miR132
Species	Vitis vinifera
Class	miRNA
Genome position	Chr5:21618479-21618699 [-]
Reference genome	12X
Source	SRR1049370
Length	24
Mature sequence(if miRNA)	1 - UCAGCCAAAAAACAAACGCCACCU - 24
Stem-loop(if miRNA)	--                               UU    AUA                  GU        A       GC  C                C         U   GUGGUGUUUGUUUUUUGGCUGAAUAGAAAAA  CAAA   UUUGGCUUUUUCUAUUCA  UAAAAGUA CUUAUUG  AU AACCAAUAUAAUUAAA UAAACUUAU G   |||||||||||||||||||||||||||||||  ||||   ||||||||||||||||||  |||||||| |||||||  || |||||||||||||||| ||||||||| A   CACCGCAAACAAAAAACCGACUUAUCUUUUU  GUUU   AAACUGAAAAAGAUAAGU  AUUUUCAU GAAUAAC  UG UUGGUUAUAUUGAUUU AUUUGAAUA U UC                               CU    AUA                  UG        G       UA  A                C         A
Stem-loop sequence	GUGGUGUUUGUUUUUUGGCUGAAUAGAAAAAUUCAAAAUAUUUGGCUUUUUCUAUUCAGUUAAAAGUAACUUAUUGGCAUCAACCAAUAUAAUUAAACUAAACUUAUUGAUAAUAAGUUUACUUUAGUUAUAUUGGUUAGUAUCAAUAAGGUACUUUUAGUUGAAUAGAAAAAGUCAAAAUAUUUGUCUUUUUCUAUUCAGCCAAAAAACAAACGCCACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA172889.1	ncRNA:24   UCCACCGCAAACAAAAAACCGACU   1   |*||||||||||||||||||||*| targets:3785   AUGUGGCGUUUGUUUUUUGGCUAA   3808 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167155.1	ncRNA:24   UCCACCGCAAACAAAAAACCGACU   1   ||||||=|||||||||||||=||| targets:3623   AGGUGGUGUUUGUUUUUUGGUUGA   3646 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:24   UCCACCGCAAACAAAAAACCGACU   1   ||||||=|||||||||||||=||| targets:3405   AGGUGGUGUUUGUUUUUUGGUUGA   3428 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019224211.1	ncRNA:24   UCCACCGCAAACAAAAAACCGACU   1   |*||||=|||||||||||||*||| targets:6924   AAGUGGUGUUUGUUUUUUGGAUGA   6947 Target Full Sequence	2.5	PREDICTED: Vitis vinifera uncharacterized LOC100263302 (LOC100263302), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:24   UCCACCGCAAACAAAAAACCGACU   1   ***|||=||||||||||||*|||| targets:1834   UUAUGGUGUUUGUUUUUUGACUGA   1857 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget